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Cannot install Lxml on Mac OS X 10.9

I want to install Lxml so I can then install Scrapy.

When I updated my Mac today it wouldn't let me reinstall lxml, I get the following error:

In file included from src/lxml/lxml.etree.c:314:
/private/tmp/pip_build_root/lxml/src/lxml/includes/etree_defs.h:9:10: fatal error: 'libxml/xmlversion.h' file not found
#include "libxml/xmlversion.h"
         ^
1 error generated.
error: command 'cc' failed with exit status 1

I have tried using brew to install libxml2 and libxslt, both installed fine but I still cannot install lxml.

Last time I was installing I needed to enable the developer tools on Xcode but since it's updated to Xcode 5 it doesn't give me that option anymore.

Does anyone know what I need to do?

PS: I recommend using: pip3.4 install lxml or STATIC_DEPS=true pip3.4 install lxml commands if you're targeting specific installation for Python3 (adapt to your version, bash TAB completion is your friend); so that you install for the specific version of your target program that is using this/these libs. Otherwise it's easy to spend 30mn installing the lib for the wrong interpreter ;-)
Be sure to mark the correct answer as the solution so others can use your question as guidance when they have the same problem :)

s
shim

You should install or upgrade the commandline tool for Xcode. Try this in a terminal:

xcode-select --install

I get "Can't install the software because it is not currently available from the Software Update server."
It's worth noting that you seem to get "Can't install the software because it is not currently available from the Software Update server." when the tools are already installed.
A few notes on how to manually check if they are installed - stackoverflow.com/a/20834890/255961
Works fine on 10.10.3. Not sure why others need to manipulate cflags.
And worked for me after upgrade to El Capitan (10.11).
M
Markus Amalthea Magnuson

I solved this issue on Yosemite by both installing and linking libxml2 and libxslt through brew:

brew install libxml2
brew install libxslt
brew link libxml2 --force
brew link libxslt --force

If you have solved the problem using this method but it pops up again at a later time, you might need to run this before the four lines above:

brew unlink libxml2
brew unlink libxslt

If you are having permission errors with Homebrew, especially on El Capitan, this is a helpful document. In essence, regardless of OS X version, try running:

sudo chown -R $(whoami):admin /usr/local

The most useful answer. It's incredible how the xcode-select get so many votes. If you are using brew, you already did code-select or install xcode a long time ago.
@MarcosEliziárioSantos The word "install" in xcode-select --install is a bit misleading. I found that after upgrading from Mavericks to Yosemite, I needed to run xcode-select --install again to upgrade to Yosemite's Command Line Tools. It (partially) solved problems I was running into, and in any case would be harmless to run redundantly.
@MarcosEliziárioSantos probably because top answer fixed the problem for most people. This solution worked as a workaround, but I ran into similar problems with libmemcache few seconds later. Top answer fixed the problem. Everyone should consider this method only after trying the top answer first.
@MarcosEliziárioSantos one more thing - I am using brew but it was a fresh install (I had only XCode installed via AppStore, which is enough to install homebrew).
Also, Homebrew always ruins my permissions. I used the Xcode solution.
J
John Mee

You may solve your problem by running this on the commandline:

 STATIC_DEPS=true pip install lxml

It sure helped me. Explanations on docs


Thank you so much. This saved me an incredibly amount of time.
Works fine on OSX 10.9.5
Thanks! Works fine on macOS 10.14
r
robinsj

I tried most of the solutions above, but none of them worked for me. I'm running Yosemite 10.10, the only solution that worked for me was to type this in the terminal:

sudo CPATH=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/usr/include/libxml2 CFLAGS=-Qunused-arguments CPPFLAGS=-Qunused-arguments pip install lxml

EDIT: If you are using virtualenv, the sudo in beginning is not needed.


This solution works on Mavericks also! If you are using virtualenv no sudo is needed.
Mine is still outputting OSError: [Errno 1] Operation not permitted: '/usr/bin/build' despite running the command as sudo. Any ideas?
@PLPeeters Which version of python are you running and which OS version?
I'm on the El Capitan beta (so that's 10.11) and using Python 2.7 for this. I'm guessing it might have something to do with El Capitan...
You are a life saver. El capitan works, in virtualenv no sudo needed. Thanks!
j
jdkoftinoff

This has been bothering me as well for a while. I don't know the internals enough about python distutils etc, but the include path here is wrong. I made the following ugly hack to hold me over until the python lxml people can do the proper fix.

sudo ln -s  /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/usr/include/libxml2/libxml/ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/usr/include/libxml

S
Samy Vilar

Installing globally... OS X 10.9.2

xcode-select --install
sudo easy_install pip
sudo CPATH=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/usr/include/libxml2 CFLAGS=-Qunused-arguments CPPFLAGS=-Qunused-arguments pip install lxml

This worked for me, had to update xcode dev tools first using: xcode-select --install
This did the trick. I already had xcode command line tools installed, but looks like it needed to be updated.
p
panchicore

instalation instructions on http://lxml.de/installation.html explain:

To speed up the build in test environments, e.g. on a continuous integration server, disable the C compiler optimisations by setting the CFLAGS environment variable:

CFLAGS="-O0" pip install lxml

Worked flawless for me. +1
C
Community

None of the above worked for me on 10.9.2, as compilation bails out with following error:

clang: error: unknown argument: '-mno-fused-madd' 

Which actually lead to cleanest solution (see more details in [1]):

export CFLAGS=-Qunused-arguments
export CPPFLAGS=-Qunused-arguments

pip install lxml

or following if installing globally

sudo pip install lxml

[1] clang error: unknown argument: '-mno-fused-madd' (python package installation failure)


thanks. this helped me. wish answers could sometimes contain meta about the os versions.
If installing globally you may need to /etc/sudoers with sudo visudo to preserve the environment variables.
R
RemembranceNN
xcode-select --install
sudo easy_install pip
sudo pip install lxml

It's interesting that some people needed to sudo the pip install while others didn't. (I had permission problems when running pip install directly, and had to sudo.) I can only assume that I had installed something python-related as root in the distant past, which created certain (system) folders as root instead of as myself.
This worked for me, I had just set up a new mac for work and even though i installed XCode, i guess it didn't install the command line tools? Anyway, running this, having it install the tools and then just rerunning 'pip3.4 install lxml --user' worked, no sudo or EXPORTING any shell variables.
This worked perfectly on Yosemite in a virtualenv. I didn't need sudo though.
@NoachMagedman I'm installing into a virtual environment, so I cannot use sudo. If I used sudo, it would install it into my global python packages, which is what i'm trying to avoid.
h
holys

I solved this issue on Yosemite by running the following commands:

xcode-select install #this may take several minutes.
pip install lxml

I had enough of homebrew creating a tangled mess of things on my old system, so I vowed not to use it with my new Yosemite 10.10.2 setup. I already installed the whole Xcode package, so no need for xcode-select install for me. I downloaded the latest libxml2 and libxlst packages (required for lxml), but before installing them I thought I'd check if Yosemite already has those files some where. I created a virtual env(using virtualenvwrapper), and then I did pip install lxml, and lxml installed error free. I tested lxml by scraping google's home page, and that worked fine.
G
Gaëtan Lehmann

With homebrew, libxml2 is hidden to not interfere with the system libxml2, so pip must be helped a little in order to find it.

With bash:

LDFLAGS=-L`brew --prefix libxml2`/lib CPPFLAGS=-I`brew --prefix libxml2`/include/libxml2 pip install --user lxml

With fish:

env LDFLAGS=-L(brew --prefix libxml2)/lib CPPFLAGS=-I(brew --prefix libxml2)/include/libxml2 pip install --user lxml

n
npiv

OSX 10.9.2

sudo env ARCHFLAGS=-Wno-error=unused-command-line-argument-hard-error-in-future STATIC_DEPS=true pip install lxml

H
Hexatonic

I tried all the answers on this page, none of them worked for me. I'm running OS X Version 10.9.2

But this definitely works....like a charm:

ARCHFLAGS=-Wno-error=unused-command-line-argument-hard-error-in-future pip install lxml


This merely disables hard errors for unused arguments, which I've encountered during many other library compilations on OS X Mavericks. I've found it useful to add the line to my bash profile, so I don't have to look it up every time I encounter it: export ARCHFLAGS="-Wno-error=unused-command-line-argument-hard-error-in-future" or you can add architecture types explicitly like this: export ARCHFLAGS="-arch x86_64 -arch i386 -Wno-error=unused-command-line-argument-hard-error-in-future"
A
Adam Sheridan

Unfortunately xcode-select --install did not work for me as I already had the latest version.

It's very strange but I solved the issue by opening XCode and accepting the Terms & Conditions. Re-running pip install lxml returned no errors after.


R
Ryszard Cetnarski

After successful install from pip (lxml 3.6.4) I was getting an error when importing the lxml.etree module.

I was searching endlessly to install this as a requisite for scrapy, and tried all the options, but finally this worked for me (mac osx 10.11 python 2.7):

$ STATIC_DEPS=true sudo easy_install-2.7 "lxml==2.3.5"

The older version of lxml seem to work with etree module.

Pip can often ignore the specified version of a package, for example when you have the newer version in the pip cache, thus the easy_install. The '-2.7' option is for python version, omit this if you are installing for python 3.x.


T
Tho

In my case, I must shutdown Kaspersky Antivirus before installing lxml by:

pip install lxml

f
furins

before compiling add the path that to xmlversion.h into your environment.

$ set INCLUDE=$INCLUDE:/private/tmp/pip_build_root/lxml/src/lxml/

But make sure the path I've provided has the xmlversion.h file located inside. Then,

$ python setup.py install

w
wisbucky

pip did not work for me. I went to https://pypi.python.org/pypi/lxml/2.3 and downloaded the macosx .egg file:

https://pypi.python.org/packages/2.7/l/lxml/lxml-2.3-py2.7-macosx-10.6-intel.egg#md5=52322e4698d68800c6b6aedb0dbe5f34

Then used command line easy_install to install the .egg file.


C
Community

This post links to a solution that worked for me Python3, lxml and "Symbol not found: _lzma_auto_decoder" on Mac OS X 10.9

hth


s
shim

I met the same question and after days of working I resolved this problem on my OS X 10.9.4, with Python 3.4.1.

Here's my solution,

According to installing lxml from lxml.de,

A macport of lxml is available. Try something like port install py25-lxml

If you do not have MacPort, install it from MacPort.org. It's quite easy. You may also need a compiler, to install Xcode compiling tools, use xcode-select --install

Firstly I updated my port to the latest version via sudo port selfupdate,

Then I just type sudo port install libxml2 and several minutes later you should see libxml2 installed successfully. Probably you may also need libxslt to install lxml. To install libxslt, use:sudo port install libxslt.

Now, just type pip install lxml, it should work fine.


s
shim

I am using OSX 10.9.2 and I get the same error.

Installation of the Xcode command line tools does not help for this particular version of OSX.

I think a better approach to fix this is to install with the following command:

$ CPATH=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/usr/include/libxml2 pip install lxml

This is similar to jdkoftinoff' fix, but does not alter your system in a permanent way.


s
shim

After much tearing of the hair and gnashing of the teeth, I uninstalled Xcode with pip and ran:

easy_install lxml

And all was well.


J
John Mee

Try:

% STATIC_DEPS=true pip install lxml

Or:

% STATIC_DEPS=true sudo pip install lxml

It works!


Duplicate of Andre's answer.